Variant report
Variant | rs28679567 |
---|---|
Chromosome Location | chr4:148395332-148395333 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10001478 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10003944 | 1.00[AMR][1000 genomes] |
rs10010949 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10011035 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10012917 | 1.00[AMR][1000 genomes] |
rs10016209 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10019230 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10024734 | 1.00[AMR][1000 genomes] |
rs10028666 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10305849 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10305881 | 1.00[AMR][1000 genomes] |
rs10305883 | 1.00[AMR][1000 genomes] |
rs11939191 | 1.00[AMR][1000 genomes] |
rs11943100 | 1.00[AMR][1000 genomes] |
rs11943383 | 1.00[AMR][1000 genomes] |
rs13435440 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1400557 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16998721 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28386186 | 1.00[AMR][1000 genomes] |
rs28572568 | 1.00[AMR][1000 genomes] |
rs28687346 | 1.00[AMR][1000 genomes] |
rs28808633 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28889981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs955558 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9884495 | 1.00[AMR][1000 genomes] |
rs9993718 | 1.00[AMR][1000 genomes] |
rs9993720 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9997823 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830109 | chr4:148295061-148468605 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1028958 | chr4:148377752-148793485 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:148383400-148401000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |