Variant report

Variant	rs10004438
Chromosome Location	chr4:131055176-131055177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10013106	0.87[EUR][1000 genomes]
rs10014736	0.92[AFR][1000 genomes]
rs10019789	0.98[EUR][1000 genomes]
rs10030187	0.81[EUR][1000 genomes]
rs10030188	0.81[EUR][1000 genomes]
rs10518562	0.93[AFR][1000 genomes]
rs11935280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13136824	0.95[AFR][1000 genomes]
rs13143533	0.98[EUR][1000 genomes]
rs13145306	0.98[EUR][1000 genomes]
rs13149247	0.83[EUR][1000 genomes]
rs1493212	0.87[EUR][1000 genomes]
rs17050849	0.82[AFR][1000 genomes]
rs17405853	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17471046	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28415658	0.89[EUR][1000 genomes]
rs28453003	0.95[AFR][1000 genomes]
rs28718698	0.98[EUR][1000 genomes]
rs28870182	0.90[EUR][1000 genomes]
rs35319540	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35673533	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71613296	0.90[EUR][1000 genomes]
rs71613299	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131045000-131056600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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