Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004438	0.98[EUR][1000 genomes]
rs10013106	0.85[EUR][1000 genomes]
rs10030187	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10030188	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11935280	0.98[EUR][1000 genomes]
rs13125188	0.89[AMR][1000 genomes]
rs13141776	0.89[AMR][1000 genomes]
rs13143533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13145306	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13149247	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1493212	0.85[EUR][1000 genomes]
rs17405853	0.98[EUR][1000 genomes]
rs17471046	0.87[EUR][1000 genomes]
rs28415658	0.87[EUR][1000 genomes]
rs28718698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28792397	0.89[AMR][1000 genomes]
rs28870182	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35319540	0.87[EUR][1000 genomes]
rs35673533	0.94[EUR][1000 genomes]
rs71613296	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71613299	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131032800-131035400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:131032800-131052200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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