Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10004438	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10013106	0.83[EUR][1000 genomes]
rs10017699	0.81[AFR][1000 genomes]
rs10019789	0.94[EUR][1000 genomes]
rs11933649	0.81[AFR][1000 genomes]
rs11935280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13143533	0.94[EUR][1000 genomes]
rs13145306	0.94[EUR][1000 genomes]
rs13147127	0.86[AFR][1000 genomes]
rs1493212	0.83[EUR][1000 genomes]
rs17405853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17471046	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28363914	0.84[AFR][1000 genomes]
rs28415658	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28548359	0.87[AFR][1000 genomes]
rs28718698	0.94[EUR][1000 genomes]
rs28870182	0.87[EUR][1000 genomes]
rs35319540	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71613296	0.87[EUR][1000 genomes]
rs71613299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs949531	0.87[AFR][1000 genomes]
rs949532	0.87[AFR][1000 genomes]
rs958409	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131030000-131033200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:131030400-131031800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:131030600-131031200	Enhancers	GM12878-XiMat	blood
4	chr4:131030600-131032800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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