Variant report

Variant	rs17471046
Chromosome Location	chr4:131013901-131013902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10004438	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10013106	0.98[EUR][1000 genomes]
rs10017699	0.88[AFR][1000 genomes]
rs10019789	0.87[EUR][1000 genomes]
rs10030187	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10030188	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11933649	0.81[AFR][1000 genomes]
rs11935280	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13125188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13141776	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13143533	0.87[EUR][1000 genomes]
rs13145306	0.87[EUR][1000 genomes]
rs13147127	0.86[AFR][1000 genomes]
rs13149247	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1493212	0.98[EUR][1000 genomes]
rs17405853	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28363914	0.91[AFR][1000 genomes]
rs28415658	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28548359	0.87[AFR][1000 genomes]
rs28605421	0.89[EUR][1000 genomes]
rs28718698	0.87[EUR][1000 genomes]
rs28792397	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28870182	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35319540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35673533	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71613296	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71613299	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs949531	0.87[AFR][1000 genomes]
rs949532	0.87[AFR][1000 genomes]
rs958409	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131013000-131014000	Enhancers	Fetal Stomach	stomach
2	chr4:131013200-131014600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:131013400-131014400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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