Variant report
| Variant | rs71613296 |
|---|---|
| Chromosome Location | chr4:131015313-131015314 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10004438 | 0.90[EUR][1000 genomes] |
| rs10013106 | 0.92[EUR][1000 genomes] |
| rs10019789 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10030187 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10030188 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11935280 | 0.90[EUR][1000 genomes] |
| rs13125188 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs13141776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13143533 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13145306 | 1.00[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13147782 | 1.00[AFR][1000 genomes] |
| rs13149247 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1493212 | 0.92[EUR][1000 genomes] |
| rs17405853 | 0.90[EUR][1000 genomes] |
| rs17471046 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28415658 | 0.94[EUR][1000 genomes] |
| rs28605421 | 0.87[EUR][1000 genomes] |
| rs28718698 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28792397 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs28870182 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35319540 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35673533 | 0.87[EUR][1000 genomes] |
| rs71613299 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv595414 | chr4:130983055-131024471 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv595415 | chr4:130983605-131046911 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv595416 | chr4:130998472-131834405 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | esv2762461 | chr4:131004382-131391658 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:131014600-131020000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
