Variant report

Variant	rs1000458
Chromosome Location	chr2:76501880-76501881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1000459	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10196032	0.90[AMR][1000 genomes]
rs10432645	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12466869	0.80[AMR][1000 genomes]
rs12474933	0.80[AMR][1000 genomes]
rs13393516	0.80[AMR][1000 genomes]
rs13397093	0.80[AMR][1000 genomes]
rs13397174	0.80[AMR][1000 genomes]
rs13410946	0.80[AMR][1000 genomes]
rs13422561	0.80[AMR][1000 genomes]
rs1405342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1526614	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1526616	0.87[AMR][1000 genomes]
rs1526618	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1526631	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1568984	0.82[AFR][1000 genomes]
rs1589948	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1609006	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1609007	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1852365	0.88[AMR][1000 genomes]
rs1949924	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860733	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853212	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6704909	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6747714	0.90[AMR][1000 genomes]
rs6748106	0.90[AMR][1000 genomes]
rs6760707	0.90[AMR][1000 genomes]
rs7567752	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7574697	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7587052	0.80[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1000458	NAT8	cis	parietal	SCAN
rs1000458	C2orf3	cis	cerebellum	SCAN
rs1000458	REG3A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76492400-76505200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:76495400-76503600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:76496600-76503800	Enhancers	Hela-S3	cervix
4	chr2:76497600-76503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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