Variant report

Variant	rs1526631
Chromosome Location	chr2:76506395-76506396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1000458	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1000459	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10164668	0.94[ASN][1000 genomes]
rs10177266	0.94[ASN][1000 genomes]
rs10196032	0.92[AMR][1000 genomes]
rs10209467	0.94[ASN][1000 genomes]
rs10432645	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12466869	0.91[ASN][1000 genomes]
rs12468320	0.94[ASN][1000 genomes]
rs12474933	0.91[ASN][1000 genomes]
rs13393516	0.88[ASN][1000 genomes]
rs13397093	0.91[ASN][1000 genomes]
rs13397174	0.91[ASN][1000 genomes]
rs13410946	0.89[ASN][1000 genomes]
rs13422561	0.89[ASN][1000 genomes]
rs1405342	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405347	0.94[ASN][1000 genomes]
rs1526614	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1526616	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1526618	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1589948	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1609006	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1609007	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1609008	0.94[ASN][1000 genomes]
rs17703545	0.94[ASN][1000 genomes]
rs1852365	0.90[AMR][1000 genomes]
rs1949924	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2860733	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4853212	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59897260	0.92[ASN][1000 genomes]
rs6704909	0.97[ASN][1000 genomes]
rs6743740	0.91[ASN][1000 genomes]
rs6747714	0.92[AMR][1000 genomes]
rs6747727	0.95[ASN][1000 genomes]
rs6748106	0.92[AMR][1000 genomes]
rs6760707	0.92[AMR][1000 genomes]
rs7563396	0.94[ASN][1000 genomes]
rs7567752	0.85[AMR][1000 genomes]
rs7574697	0.88[AMR][1000 genomes]
rs7587052	0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1526631	REG3A	cis	cerebellum	SCAN
rs1526631	C2orf3	cis	cerebellum	SCAN
rs1526631	NAT8	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76503600-76508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:76503800-76508000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:76504400-76508600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:76504800-76509400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:76505200-76506600	Enhancers	Fetal Muscle Leg	muscle
6	chr2:76505400-76508400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:76505600-76508000	Weak transcription	Hela-S3	cervix
8	chr2:76506200-76507800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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