Variant report

Variant	rs6747727
Chromosome Location	chr2:76535474-76535475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1000459	0.92[ASN][1000 genomes]
rs10164668	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10177266	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10196032	0.86[AFR][1000 genomes]
rs10209467	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10432645	0.95[ASN][1000 genomes]
rs12466869	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12468320	0.89[ASN][1000 genomes]
rs12474933	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13393516	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13397093	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13397174	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13410946	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13422561	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1405342	0.95[ASN][1000 genomes]
rs1405347	0.89[ASN][1000 genomes]
rs1526614	0.81[ASN][1000 genomes]
rs1526616	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1526618	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1526631	0.95[ASN][1000 genomes]
rs1609006	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1609007	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1609008	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17703545	0.89[ASN][1000 genomes]
rs59897260	0.88[ASN][1000 genomes]
rs6704909	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6743740	0.86[ASN][1000 genomes]
rs6748106	0.94[AFR][1000 genomes]
rs6760707	0.94[AFR][1000 genomes]
rs7563396	0.89[ASN][1000 genomes]
rs7587052	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6747727	MTHFD2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76533600-76536800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76535400-76536200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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