Variant report
| Variant | rs1405347 |
|---|---|
| Chromosome Location | chr2:76493475-76493476 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1000459 | 0.91[ASN][1000 genomes] |
| rs10164668 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10177266 | 1.00[ASN][1000 genomes] |
| rs10209467 | 1.00[ASN][1000 genomes] |
| rs10432645 | 0.94[ASN][1000 genomes] |
| rs12466869 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12468320 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12474933 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13393516 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13397093 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13397174 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13410946 | 0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13422561 | 0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1405342 | 0.94[ASN][1000 genomes] |
| rs1526616 | 0.89[ASN][1000 genomes] |
| rs1526618 | 0.94[ASN][1000 genomes] |
| rs1526631 | 0.94[ASN][1000 genomes] |
| rs1609006 | 0.91[ASN][1000 genomes] |
| rs1609007 | 0.94[ASN][1000 genomes] |
| rs1609008 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17703545 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59897260 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6704909 | 0.91[ASN][1000 genomes] |
| rs6743740 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6747727 | 0.89[ASN][1000 genomes] |
| rs7563396 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7567752 | 0.81[ASN][1000 genomes] |
| rs7574697 | 0.81[ASN][1000 genomes] |
| rs7587052 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874312 | chr2:76430941-76500077 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76492400-76505200 | Weak transcription | Fetal Muscle Leg | muscle |
