Variant report

Variant	rs13397093
Chromosome Location	chr2:76522519-76522520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:76521785..76524023-chr2:76529327..76531798,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000458	0.80[AMR][1000 genomes]
rs1000459	0.94[ASN][1000 genomes]
rs10164668	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10177266	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10196032	0.82[AMR][1000 genomes]
rs10209467	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10432645	0.91[ASN][1000 genomes]
rs12466869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468320	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12474933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13397174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13422561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1405342	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1405347	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1526616	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1526618	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1526631	0.91[ASN][1000 genomes]
rs1589948	0.80[AMR][1000 genomes]
rs1609006	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1609007	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1609008	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17703545	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1852365	0.81[AMR][1000 genomes]
rs2860733	0.80[AMR][1000 genomes]
rs4853212	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs59897260	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6704909	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6743740	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6747714	0.82[AMR][1000 genomes]
rs6747727	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6748106	0.82[AMR][1000 genomes]
rs6760707	0.82[AMR][1000 genomes]
rs7563396	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7567752	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7574697	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7587052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76520600-76524800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76521400-76523600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:76521600-76523200	Enhancers	Brain Substantia Nigra	brain
4	chr2:76522200-76523000	Enhancers	Brain Hippocampus Middle	brain
5	chr2:76522400-76523800	Enhancers	Brain Cingulate Gyrus	brain

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