Variant report
| Variant | rs10196032 |
|---|---|
| Chromosome Location | chr2:76534954-76534955 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1000458 | 0.90[AMR][1000 genomes] |
| rs1000459 | 0.89[AMR][1000 genomes] |
| rs10164668 | 0.86[AMR][1000 genomes] |
| rs10177266 | 0.82[AMR][1000 genomes] |
| rs10209467 | 0.82[AMR][1000 genomes] |
| rs10432645 | 0.87[AMR][1000 genomes] |
| rs12466869 | 0.82[AMR][1000 genomes] |
| rs12474933 | 0.82[AMR][1000 genomes] |
| rs13393516 | 0.82[AMR][1000 genomes] |
| rs13397093 | 0.82[AMR][1000 genomes] |
| rs13397174 | 0.82[AMR][1000 genomes] |
| rs13410946 | 0.82[AMR][1000 genomes] |
| rs13422561 | 0.82[AMR][1000 genomes] |
| rs1405342 | 0.90[AMR][1000 genomes] |
| rs1526614 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1526631 | 0.92[AMR][1000 genomes] |
| rs1589948 | 0.90[AMR][1000 genomes] |
| rs1609008 | 0.84[AMR][1000 genomes] |
| rs1852365 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1949924 | 0.93[AMR][1000 genomes] |
| rs2860733 | 0.90[AMR][1000 genomes] |
| rs4853212 | 0.90[AMR][1000 genomes] |
| rs6747714 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6747727 | 0.86[AFR][1000 genomes] |
| rs6748106 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6760707 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7567752 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7574697 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7587052 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006097 | chr2:76524248-76675427 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76533600-76536800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr2:76534800-76535000 | Enhancers | Hela-S3 | cervix |
