Variant report

Variant	rs10011980
Chromosome Location	chr4:62126826-62126827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10001902	1.00[EUR][1000 genomes]
rs10009337	1.00[AMR][1000 genomes]
rs10011945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015703	1.00[AMR][1000 genomes]
rs10018363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031378	1.00[AMR][1000 genomes]
rs11931836	1.00[EUR][1000 genomes]
rs17090409	1.00[EUR][1000 genomes]
rs28397991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28399770	1.00[AMR][1000 genomes]
rs28541298	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28612293	1.00[EUR][1000 genomes]
rs28716885	1.00[AMR][1000 genomes]
rs28722177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35730888	1.00[EUR][1000 genomes]
rs59564400	1.00[EUR][1000 genomes]
rs6811215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62116000-62127000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62119800-62127400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62122000-62128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:62124400-62127000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:62124400-62127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:62124600-62129200	Weak transcription	Fetal Heart	heart
8	chr4:62125400-62127200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:62126400-62128000	Enhancers	Brain Substantia Nigra	brain
10	chr4:62126600-62127400	Enhancers	Brain Hippocampus Middle	brain
11	chr4:62126600-62128000	Enhancers	Brain Angular Gyrus	brain
12	chr4:62126800-62127200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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