Variant report

Variant	rs28612293
Chromosome Location	chr4:62140637-62140638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001902	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10011945	1.00[EUR][1000 genomes]
rs10011980	1.00[EUR][1000 genomes]
rs10018363	1.00[EUR][1000 genomes]
rs11931836	1.00[EUR][1000 genomes]
rs17090409	1.00[EUR][1000 genomes]
rs28397991	1.00[EUR][1000 genomes]
rs28541298	1.00[EUR][1000 genomes]
rs28562321	1.00[EUR][1000 genomes]
rs35730888	1.00[EUR][1000 genomes]
rs59564400	1.00[EUR][1000 genomes]
rs6811215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62138400-62141000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:62139400-62141000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62140000-62140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:62140000-62141000	Enhancers	Brain Substantia Nigra	brain
8	chr4:62140000-62141200	Weak transcription	Brain Angular Gyrus	brain
9	chr4:62140200-62141200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:62140400-62141400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:62140400-62141400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:62140600-62140800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:62140600-62141400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr4:62140600-62142000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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