Variant report

Variant	rs11931836
Chromosome Location	chr4:62129528-62129529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001902	1.00[EUR][1000 genomes]
rs10011945	1.00[EUR][1000 genomes]
rs10011980	1.00[EUR][1000 genomes]
rs10018363	1.00[EUR][1000 genomes]
rs17090409	1.00[EUR][1000 genomes]
rs28397991	1.00[EUR][1000 genomes]
rs28541298	1.00[EUR][1000 genomes]
rs28562321	1.00[EUR][1000 genomes]
rs28612293	1.00[EUR][1000 genomes]
rs35730888	1.00[EUR][1000 genomes]
rs59564400	1.00[EUR][1000 genomes]
rs6811215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128000-62129800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:62128000-62131000	Weak transcription	Brain Angular Gyrus	brain
3	chr4:62128000-62133000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:62128400-62130200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:62128400-62133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:62128600-62131000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:62128800-62130800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:62129200-62130600	Enhancers	Fetal Heart	heart
10	chr4:62129200-62131200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:62129200-62134000	Enhancers	Brain Anterior Caudate	brain
12	chr4:62129400-62129600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:62129400-62129800	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr4:62129400-62131000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:62129400-62131200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:62129400-62131200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:62129400-62131200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:62129400-62131600	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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