Variant report

Variant	rs28397991
Chromosome Location	chr4:62134625-62134626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10001902	1.00[EUR][1000 genomes]
rs10009337	1.00[AMR][1000 genomes]
rs10011945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015703	1.00[AMR][1000 genomes]
rs10018363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031378	1.00[AMR][1000 genomes]
rs11931836	1.00[EUR][1000 genomes]
rs17090409	1.00[EUR][1000 genomes]
rs28399770	1.00[AMR][1000 genomes]
rs28541298	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28612293	1.00[EUR][1000 genomes]
rs28716885	1.00[AMR][1000 genomes]
rs28722177	1.00[AMR][1000 genomes]
rs35730888	1.00[EUR][1000 genomes]
rs59564400	1.00[EUR][1000 genomes]
rs6811215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62130200-62134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:62130600-62134800	Weak transcription	Fetal Heart	heart
5	chr4:62131000-62134800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62131200-62135000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:62131200-62135000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:62133000-62135600	Enhancers	Brain Substantia Nigra	brain
9	chr4:62133400-62136400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:62133600-62135000	Weak transcription	Brain Angular Gyrus	brain
11	chr4:62133800-62134800	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:62133800-62135000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:62134000-62134800	Weak transcription	Brain Anterior Caudate	brain
14	chr4:62134200-62137200	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:62134200-62138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:62134600-62135000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:62134600-62135000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:62134600-62135000	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:62134600-62135000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:62134600-62135200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:62134600-62135800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:62134600-62135800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:62134600-62136000	Enhancers	HUES48 Cell Line	embryonic stem cell

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