Variant report

Variant	rs35730888
Chromosome Location	chr4:62150681-62150682
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011945	1.00[EUR][1000 genomes]
rs10011980	1.00[EUR][1000 genomes]
rs10018363	1.00[EUR][1000 genomes]
rs11931836	1.00[EUR][1000 genomes]
rs17090409	1.00[EUR][1000 genomes]
rs28397991	1.00[EUR][1000 genomes]
rs28541298	1.00[EUR][1000 genomes]
rs28562321	1.00[EUR][1000 genomes]
rs28612293	1.00[EUR][1000 genomes]
rs59564400	1.00[EUR][1000 genomes]
rs6811215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62141400-62151000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:62149400-62151000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62149400-62151200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:62149800-62151200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:62150600-62151400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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