Variant report

Variant	rs10014623
Chromosome Location	chr4:110232161-110232162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10031251	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10031399	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10155246	0.82[CHB][hapmap];0.96[ASN][1000 genomes]
rs10488879	0.87[EUR][1000 genomes]
rs10516557	0.81[CHD][hapmap];0.85[TSI][hapmap]
rs11098035	0.85[TSI][hapmap]
rs11937053	0.81[CHD][hapmap];0.85[TSI][hapmap]
rs12641197	0.82[ASN][1000 genomes]
rs12641272	0.82[ASN][1000 genomes]
rs12643881	0.81[CHD][hapmap];0.85[TSI][hapmap]
rs13104799	1.00[ASN][1000 genomes]
rs1557804	0.89[ASN][1000 genomes]
rs17040454	0.81[CHD][hapmap];0.85[TSI][hapmap]
rs17235830	0.97[EUR][1000 genomes]
rs17842269	0.82[ASN][1000 genomes]
rs1859144	0.82[ASN][1000 genomes]
rs1859145	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1859146	0.89[ASN][1000 genomes]
rs1981541	0.96[ASN][1000 genomes]
rs2079107	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2214377	0.82[ASN][1000 genomes]
rs28374470	1.00[ASN][1000 genomes]
rs28463999	0.82[ASN][1000 genomes]
rs28542804	0.96[ASN][1000 genomes]
rs60369504	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825928	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs730310	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7680752	0.89[ASN][1000 genomes]
rs7680920	0.89[ASN][1000 genomes]
rs7695754	1.00[JPT][hapmap]
rs7699247	0.96[ASN][1000 genomes]
rs9307329	0.82[ASN][1000 genomes]
rs9996537	0.82[ASN][1000 genomes]
rs9996920	0.82[ASN][1000 genomes]
rs9999270	0.82[ASN][1000 genomes]
rs9999278	0.82[ASN][1000 genomes]
rs9999751	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv515893	chr4:110222845-110254841	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110231000-110232200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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