Variant report
| Variant | rs60369504 |
|---|---|
| Chromosome Location | chr4:110234525-110234526 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SEC24B-1 | chr4:110234499-110234597 | ENSG00000246774 |
| 2 | lnc-SEC24B-1 | chr4:110234499-110234649 | NONHSAT097774 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10005198 | 1.00[ASN][1000 genomes] |
| rs10007410 | 0.95[ASN][1000 genomes] |
| rs10014623 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10031251 | 0.97[EUR][1000 genomes] |
| rs10031399 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10488879 | 0.87[EUR][1000 genomes] |
| rs11933172 | 1.00[ASN][1000 genomes] |
| rs17235830 | 0.97[EUR][1000 genomes] |
| rs1859145 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1859147 | 0.83[ASN][1000 genomes] |
| rs1981540 | 0.83[ASN][1000 genomes] |
| rs2079107 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2079108 | 1.00[ASN][1000 genomes] |
| rs28749845 | 1.00[ASN][1000 genomes] |
| rs4524460 | 1.00[ASN][1000 genomes] |
| rs6827985 | 1.00[ASN][1000 genomes] |
| rs730310 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7673867 | 0.83[ASN][1000 genomes] |
| rs7675344 | 0.87[ASN][1000 genomes] |
| rs9996165 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461613 | chr4:109922064-110593460 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv595129 | chr4:109922064-110593460 | Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv515893 | chr4:110222845-110254841 | Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
