Variant report

Variant	rs28749845
Chromosome Location	chr4:110232090-110232091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10005198	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007410	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155246	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11933172	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939924	0.91[EUR][1000 genomes]
rs12641197	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12641272	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13104799	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13113384	0.94[EUR][1000 genomes]
rs13119700	0.94[EUR][1000 genomes]
rs13126829	0.90[EUR][1000 genomes]
rs13138833	0.94[EUR][1000 genomes]
rs1557804	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17842269	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859144	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1859146	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1981540	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1981541	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2079107	1.00[ASN][1000 genomes]
rs2079108	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214377	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2346014	0.94[EUR][1000 genomes]
rs28374470	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28463999	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28542804	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28585579	0.94[EUR][1000 genomes]
rs28628718	0.94[EUR][1000 genomes]
rs4524460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60369504	1.00[ASN][1000 genomes]
rs6533426	0.94[EUR][1000 genomes]
rs6827985	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841133	0.94[EUR][1000 genomes]
rs6841222	0.94[EUR][1000 genomes]
rs7665024	0.90[EUR][1000 genomes]
rs7673867	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7675344	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7680752	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7680920	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7684744	0.94[EUR][1000 genomes]
rs7685787	0.94[EUR][1000 genomes]
rs7694523	0.90[EUR][1000 genomes]
rs7699247	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs876464	0.94[EUR][1000 genomes]
rs9307329	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9993228	0.94[EUR][1000 genomes]
rs9996165	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996432	0.94[EUR][1000 genomes]
rs9996537	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9996920	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999270	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999278	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999751	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv515893	chr4:110222845-110254841	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110231000-110232200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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