Variant report

Variant	rs876464
Chromosome Location	chr4:110309570-110309571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110308992..110311628-chr4:110320661..110323611,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10000545	0.85[JPT][hapmap]
rs10002595	0.85[JPT][hapmap]
rs10005198	0.94[EUR][1000 genomes]
rs10007410	0.87[EUR][1000 genomes]
rs10028250	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10155127	0.85[JPT][hapmap]
rs10155246	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11098033	0.85[JPT][hapmap]
rs11098035	0.85[JPT][hapmap]
rs11929713	0.82[JPT][hapmap]
rs11930655	0.82[JPT][hapmap]
rs11933172	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11939924	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942140	0.87[AMR][1000 genomes]
rs11942291	0.85[JPT][hapmap]
rs11942858	0.85[JPT][hapmap]
rs11943384	0.82[JPT][hapmap]
rs11943430	0.85[JPT][hapmap]
rs12640049	0.87[AMR][1000 genomes]
rs12641197	0.89[EUR][1000 genomes]
rs12641272	0.88[EUR][1000 genomes]
rs12643055	0.85[JPT][hapmap]
rs12648138	0.85[JPT][hapmap]
rs12650654	0.85[JPT][hapmap]
rs13103034	0.85[JPT][hapmap]
rs13104799	0.91[EUR][1000 genomes]
rs13113384	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13119700	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13123618	0.85[JPT][hapmap]
rs13126829	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13138833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13143825	0.85[JPT][hapmap]
rs13145066	0.85[JPT][hapmap]
rs1509314	0.85[JPT][hapmap]
rs1509315	0.85[JPT][hapmap]
rs1557804	0.89[EUR][1000 genomes]
rs17040436	0.85[JPT][hapmap]
rs17040439	0.85[JPT][hapmap]
rs17040461	0.85[JPT][hapmap]
rs17585970	0.85[JPT][hapmap]
rs17619262	0.85[JPT][hapmap]
rs17842269	0.89[EUR][1000 genomes]
rs1859144	0.90[EUR][1000 genomes]
rs1859146	0.89[EUR][1000 genomes]
rs1859147	0.94[EUR][1000 genomes]
rs1981540	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1981541	0.89[EUR][1000 genomes]
rs2079108	0.94[EUR][1000 genomes]
rs2214377	0.89[EUR][1000 genomes]
rs2346014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28374470	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28463999	0.89[EUR][1000 genomes]
rs28542804	0.91[EUR][1000 genomes]
rs28585579	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28628718	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28681408	0.85[JPT][hapmap]
rs28749845	0.94[EUR][1000 genomes]
rs4524460	0.94[EUR][1000 genomes]
rs6533426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6815455	0.85[JPT][hapmap]
rs6818911	0.85[JPT][hapmap]
rs6825928	1.00[CEU][hapmap]
rs6827985	0.94[EUR][1000 genomes]
rs6835683	0.85[JPT][hapmap]
rs6841133	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6841198	0.85[JPT][hapmap]
rs6841222	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848452	0.82[AMR][1000 genomes]
rs6856291	0.85[JPT][hapmap]
rs7436583	0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs7436745	0.85[JPT][hapmap]
rs7440570	0.85[JPT][hapmap]
rs7665024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7673595	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7673867	0.94[EUR][1000 genomes]
rs7675344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs7675602	0.85[JPT][hapmap]
rs7680752	0.89[EUR][1000 genomes]
rs7680920	0.89[EUR][1000 genomes]
rs7684744	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685787	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7687245	0.85[JPT][hapmap]
rs7694523	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7695754	1.00[CEU][hapmap]
rs7699247	0.84[EUR][1000 genomes]
rs9307329	0.89[EUR][1000 genomes]
rs9985632	0.85[JPT][hapmap]
rs9985964	0.85[JPT][hapmap]
rs9993228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994676	0.85[JPT][hapmap]
rs9996165	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9996432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996537	0.89[EUR][1000 genomes]
rs9996920	0.89[EUR][1000 genomes]
rs9999270	0.89[EUR][1000 genomes]
rs9999278	0.89[EUR][1000 genomes]
rs9999570	0.85[JPT][hapmap]
rs9999751	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110305600-110310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:110307800-110310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:110307800-110310200	Weak transcription	Fetal Heart	heart
5	chr4:110308400-110310000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:110308600-110309600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:110308800-110310400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:110308800-110310600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:110309000-110310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:110309000-110310000	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:110309200-110310200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:110309400-110309600	Enhancers	Muscle Satellite Cultured Cells	--

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