Variant report

Variant	rs13143825
Chromosome Location	chr4:110406594-110406595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110400854..110403769-chr4:110406464..110409189,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10000545	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10002595	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10005355	1.00[ASN][1000 genomes]
rs10016533	0.86[CEU][hapmap]
rs10155127	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516558	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11098035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11929713	0.91[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930655	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933971	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11934486	0.86[ASN][1000 genomes]
rs11935440	0.90[ASN][1000 genomes]
rs11935629	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11938593	0.90[ASN][1000 genomes]
rs11941344	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942140	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11942291	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942928	0.90[ASN][1000 genomes]
rs11943384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11943430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11944375	0.90[ASN][1000 genomes]
rs11944427	0.90[ASN][1000 genomes]
rs11944659	0.86[ASN][1000 genomes]
rs12639832	0.86[ASN][1000 genomes]
rs12640049	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640161	0.94[ASN][1000 genomes]
rs12642304	1.00[ASN][1000 genomes]
rs12643055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643844	1.00[ASN][1000 genomes]
rs12644055	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs12647695	0.90[ASN][1000 genomes]
rs12648138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12648965	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650654	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12650873	0.90[ASN][1000 genomes]
rs13103034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13110999	0.93[CEU][hapmap]
rs13122093	0.93[CEU][hapmap]
rs13123618	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13125368	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128124	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128221	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13134239	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140373	0.93[CEU][hapmap]
rs13141701	1.00[ASN][1000 genomes]
rs13142698	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13145066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509314	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1509315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040410	0.90[ASN][1000 genomes]
rs17040436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040488	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040510	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17619262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28521972	0.85[ASN][1000 genomes]
rs28681408	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34153531	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34224638	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274964	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34377662	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34441811	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34482781	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34505473	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34636377	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34836476	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35110951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35359830	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35473144	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35594044	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35762958	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35791246	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35940980	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36009064	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36115572	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775962	1.00[ASN][1000 genomes]
rs60957336	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61004219	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61242473	0.98[ASN][1000 genomes]
rs61439452	0.88[ASN][1000 genomes]
rs61553525	0.90[ASN][1000 genomes]
rs6533428	0.80[ASN][1000 genomes]
rs6533429	0.90[ASN][1000 genomes]
rs66642182	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66667140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67473696	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68041341	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812469	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6817954	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818911	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6823032	1.00[ASN][1000 genomes]
rs6827006	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833753	0.98[ASN][1000 genomes]
rs6835683	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837199	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6841198	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845371	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848452	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6851517	0.90[ASN][1000 genomes]
rs6852037	1.00[ASN][1000 genomes]
rs6856291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856446	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603033	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71623653	0.93[AMR][1000 genomes]
rs72896619	0.94[ASN][1000 genomes]
rs72896622	0.94[ASN][1000 genomes]
rs72896625	0.94[ASN][1000 genomes]
rs72896629	0.94[ASN][1000 genomes]
rs72896632	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73838809	1.00[ASN][1000 genomes]
rs7436583	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7436745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7440371	0.90[ASN][1000 genomes]
rs7440570	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7675602	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679836	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680296	0.85[EUR][1000 genomes]
rs7687245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9985632	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9985964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9994676	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994985	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999570	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110378800-110415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:110385600-110415800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110385600-110415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:110385600-110415800	Weak transcription	Esophagus	oesophagus
5	chr4:110385800-110415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110385800-110415800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:110385800-110415800	Weak transcription	Colonic Mucosa	Colon
8	chr4:110386000-110415800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:110386200-110415800	Weak transcription	Lung	lung
10	chr4:110386200-110415800	Weak transcription	Spleen	Spleen
11	chr4:110386400-110413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:110386400-110415600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:110386400-110415800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:110386600-110415600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:110386800-110415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:110387000-110415600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:110387000-110415800	Weak transcription	Fetal Brain Male	brain
18	chr4:110387000-110415800	Weak transcription	Fetal Brain Female	brain
19	chr4:110387000-110416400	Weak transcription	Right Ventricle	heart
20	chr4:110387200-110415600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:110387600-110415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:110390000-110415400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:110391800-110415400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:110391800-110415600	Weak transcription	Ovary	ovary
25	chr4:110393000-110415600	Weak transcription	Fetal Stomach	stomach
26	chr4:110393000-110415600	Weak transcription	Thymus	Thymus
27	chr4:110393000-110415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:110393000-110415800	Weak transcription	Gastric	stomach
29	chr4:110393000-110415800	Weak transcription	Left Ventricle	heart
30	chr4:110393000-110415800	Weak transcription	Pancreas	Pancrea
31	chr4:110393000-110417400	Weak transcription	Psoas Muscle	Psoas
32	chr4:110393200-110412400	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:110393200-110415600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:110393200-110415800	Weak transcription	Small Intestine	intestine
35	chr4:110393200-110422600	Weak transcription	Right Atrium	heart
36	chr4:110393600-110415600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr4:110393800-110413400	Weak transcription	Fetal Heart	heart
38	chr4:110393800-110415400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:110393800-110415600	Weak transcription	NHLF	lung
40	chr4:110393800-110415800	Weak transcription	Aorta	Aorta
41	chr4:110393800-110415800	Weak transcription	HSMMtube	muscle
42	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
43	chr4:110394400-110415800	Weak transcription	Brain Anterior Caudate	brain
44	chr4:110395200-110412600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:110395200-110415800	Weak transcription	A549	lung
46	chr4:110395400-110412400	Weak transcription	NH-A	brain
47	chr4:110395600-110415800	Weak transcription	Hela-S3	cervix
48	chr4:110395800-110411600	Weak transcription	NHDF-Ad	bronchial
49	chr4:110396200-110415800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:110396600-110415000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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