Variant report

Variant	rs61004219
Chromosome Location	chr4:110376926-110376927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10000545	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002595	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005355	0.92[ASN][1000 genomes]
rs10155127	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516558	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098033	0.90[ASN][1000 genomes]
rs11098035	0.98[ASN][1000 genomes]
rs11929713	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11930655	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934486	0.90[ASN][1000 genomes]
rs11935440	0.94[ASN][1000 genomes]
rs11935629	0.90[ASN][1000 genomes]
rs11938593	0.94[ASN][1000 genomes]
rs11941344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942140	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942291	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942928	0.94[ASN][1000 genomes]
rs11943384	0.94[ASN][1000 genomes]
rs11943430	0.94[ASN][1000 genomes]
rs11944375	0.94[ASN][1000 genomes]
rs11944427	0.94[ASN][1000 genomes]
rs11944659	0.90[ASN][1000 genomes]
rs12639832	0.90[ASN][1000 genomes]
rs12640049	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640161	0.98[ASN][1000 genomes]
rs12642304	0.92[ASN][1000 genomes]
rs12643055	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643844	0.92[ASN][1000 genomes]
rs12644055	0.94[ASN][1000 genomes]
rs12647695	0.94[ASN][1000 genomes]
rs12648138	0.96[ASN][1000 genomes]
rs12648965	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650654	0.94[ASN][1000 genomes]
rs12650873	0.94[ASN][1000 genomes]
rs13103034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123618	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128124	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13134239	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13141701	0.92[ASN][1000 genomes]
rs13142698	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13143825	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13145066	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1509314	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1509315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040410	0.94[ASN][1000 genomes]
rs17040436	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040439	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040488	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040510	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28521972	0.92[ASN][1000 genomes]
rs28681408	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34153531	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34224638	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34274964	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34377662	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34441811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482781	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34636377	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34836476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110951	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35359830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35473144	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35594044	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35762958	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35791246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940980	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36009064	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36115572	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775962	0.92[ASN][1000 genomes]
rs60957336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61242473	0.90[ASN][1000 genomes]
rs61439452	0.92[ASN][1000 genomes]
rs61553525	0.94[ASN][1000 genomes]
rs6533428	0.84[ASN][1000 genomes]
rs6533429	0.94[ASN][1000 genomes]
rs66642182	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66667140	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67473696	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68041341	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6812469	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6815455	0.98[ASN][1000 genomes]
rs6817954	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6818911	0.92[ASN][1000 genomes]
rs6823032	0.92[ASN][1000 genomes]
rs6827006	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833753	0.90[ASN][1000 genomes]
rs6835683	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6837199	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6841198	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845371	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848452	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851517	0.94[ASN][1000 genomes]
rs6852037	0.92[ASN][1000 genomes]
rs6856291	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6856446	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71603033	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71623653	0.81[AMR][1000 genomes]
rs72896619	0.98[ASN][1000 genomes]
rs72896622	0.98[ASN][1000 genomes]
rs72896625	0.98[ASN][1000 genomes]
rs72896629	0.98[ASN][1000 genomes]
rs72896632	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73838809	0.92[ASN][1000 genomes]
rs7436583	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7436745	0.94[ASN][1000 genomes]
rs7440371	0.94[ASN][1000 genomes]
rs7440570	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675602	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7679836	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7680296	0.83[EUR][1000 genomes]
rs9985632	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9994676	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9994985	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9999570	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
2	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
3	chr4:110358600-110378600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
6	chr4:110363600-110383600	Weak transcription	Pancreas	Pancrea
7	chr4:110363600-110383600	Weak transcription	NHDF-Ad	bronchial
8	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
10	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110365000-110383400	Weak transcription	Fetal Heart	heart
13	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
15	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
16	chr4:110367400-110383600	Weak transcription	HUVEC	blood vessel
17	chr4:110367600-110383200	Weak transcription	Right Ventricle	heart
18	chr4:110367600-110383800	Weak transcription	NHLF	lung
19	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:110367600-110384200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:110367600-110384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:110367600-110384200	Weak transcription	Brain Germinal Matrix	brain
23	chr4:110367800-110377400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:110367800-110380800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:110367800-110383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:110367800-110383800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:110367800-110384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:110367800-110384200	Weak transcription	Fetal Kidney	kidney
29	chr4:110367800-110384200	Weak transcription	Osteobl	bone
30	chr4:110368000-110383400	Weak transcription	HMEC	breast
31	chr4:110368000-110383600	Weak transcription	HepG2	liver
32	chr4:110368000-110384200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:110368600-110383600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:110368800-110377800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:110369000-110384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:110369200-110384200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:110371200-110382200	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:110371400-110377400	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:110371400-110378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:110371400-110381400	Weak transcription	Brain Anterior Caudate	brain
41	chr4:110371400-110382800	Weak transcription	NH-A	brain
42	chr4:110371400-110383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:110371400-110383200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:110371400-110383200	Weak transcription	Spleen	Spleen
45	chr4:110371400-110384000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:110371400-110384000	Weak transcription	Fetal Brain Female	brain
47	chr4:110371400-110384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:110371400-110384200	Weak transcription	Lung	lung
49	chr4:110371400-110384200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:110371400-110393200	Weak transcription	Stomach Mucosa	stomach

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