Variant report

Variant	rs34836476
Chromosome Location	chr4:110361998-110361999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110354930..110357629-chr4:110358117..110363177,4	K562	blood:
2	chr4:110353268..110357375-chr4:110361363..110366275,8	MCF-7	breast:
3	chr4:110361667..110363335-chr4:110648741..110650588,2	K562	blood:

Variant related genes	Relation type
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10000545	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002595	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005355	0.92[ASN][1000 genomes]
rs10155127	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516558	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098033	0.90[ASN][1000 genomes]
rs11098035	0.98[ASN][1000 genomes]
rs11929713	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11930655	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934486	0.90[ASN][1000 genomes]
rs11935440	0.94[ASN][1000 genomes]
rs11935629	0.90[ASN][1000 genomes]
rs11938593	0.94[ASN][1000 genomes]
rs11941344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942140	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942291	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942928	0.94[ASN][1000 genomes]
rs11943384	0.94[ASN][1000 genomes]
rs11943430	0.94[ASN][1000 genomes]
rs11944375	0.94[ASN][1000 genomes]
rs11944427	0.94[ASN][1000 genomes]
rs11944659	0.90[ASN][1000 genomes]
rs12639832	0.90[ASN][1000 genomes]
rs12640049	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640161	0.98[ASN][1000 genomes]
rs12642304	0.92[ASN][1000 genomes]
rs12643055	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643844	0.92[ASN][1000 genomes]
rs12644055	0.94[ASN][1000 genomes]
rs12647695	0.94[ASN][1000 genomes]
rs12648138	0.96[ASN][1000 genomes]
rs12648965	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650654	0.94[ASN][1000 genomes]
rs12650873	0.94[ASN][1000 genomes]
rs13103034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123618	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128124	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13134239	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13141701	0.92[ASN][1000 genomes]
rs13142698	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13143825	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13145066	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1509314	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1509315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040410	0.94[ASN][1000 genomes]
rs17040436	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040439	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040488	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040510	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28521972	0.92[ASN][1000 genomes]
rs28681408	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34153531	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34224638	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34274964	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34377662	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34441811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482781	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34636377	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35110951	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35359830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35473144	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35594044	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35762958	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35791246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940980	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36009064	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36115572	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775962	0.92[ASN][1000 genomes]
rs60957336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61004219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61242473	0.90[ASN][1000 genomes]
rs61439452	0.92[ASN][1000 genomes]
rs61553525	0.94[ASN][1000 genomes]
rs6533428	0.84[ASN][1000 genomes]
rs6533429	0.94[ASN][1000 genomes]
rs66642182	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66667140	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67473696	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68041341	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6812469	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6815455	0.98[ASN][1000 genomes]
rs6817954	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6818911	0.92[ASN][1000 genomes]
rs6823032	0.92[ASN][1000 genomes]
rs6827006	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833753	0.90[ASN][1000 genomes]
rs6835683	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6837199	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6841198	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845371	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848452	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851517	0.94[ASN][1000 genomes]
rs6852037	0.92[ASN][1000 genomes]
rs6856291	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6856446	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71603033	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71623653	0.81[AMR][1000 genomes]
rs72896619	0.98[ASN][1000 genomes]
rs72896622	0.98[ASN][1000 genomes]
rs72896625	0.98[ASN][1000 genomes]
rs72896629	0.98[ASN][1000 genomes]
rs72896632	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73838809	0.92[ASN][1000 genomes]
rs7436583	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7436745	0.94[ASN][1000 genomes]
rs7440371	0.94[ASN][1000 genomes]
rs7440570	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675602	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7679836	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7680296	0.83[EUR][1000 genomes]
rs9985632	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9994676	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9994985	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9999570	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv1836921	chr4:110354632-110370867	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1839822	chr4:110354632-110370867	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110356400-110366200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr4:110356600-110364400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr4:110356800-110366000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:110357000-110362200	Weak transcription	Aorta	Aorta
5	chr4:110357200-110362000	Weak transcription	HSMMtube	muscle
6	chr4:110357200-110362200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:110357200-110363000	Weak transcription	A549	lung
8	chr4:110357200-110363000	Weak transcription	NH-A	brain
9	chr4:110357200-110366000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:110357400-110362000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:110357400-110362200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:110357400-110362200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:110357400-110362200	Weak transcription	Gastric	stomach
14	chr4:110357400-110362600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:110357400-110362800	Weak transcription	NHLF	lung
16	chr4:110357400-110363200	Weak transcription	NHDF-Ad	bronchial
17	chr4:110357400-110364400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:110357400-110365200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:110357400-110365800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:110357400-110366200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:110357400-110367200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:110357600-110362000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:110357600-110362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:110357600-110364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:110357600-110367200	Weak transcription	Fetal Kidney	kidney
26	chr4:110357800-110363000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:110357800-110366200	Weak transcription	Fetal Stomach	stomach
28	chr4:110357800-110366400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:110357800-110370600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:110358000-110362000	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:110358000-110362000	Weak transcription	Hela-S3	cervix
32	chr4:110358000-110362200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:110358000-110362200	Weak transcription	Fetal Heart	heart
34	chr4:110358000-110362200	Weak transcription	Fetal Lung	lung
35	chr4:110358000-110362200	Weak transcription	Ovary	ovary
36	chr4:110358000-110362200	Weak transcription	Right Ventricle	heart
37	chr4:110358000-110362800	Enhancers	Liver	Liver
38	chr4:110358000-110363400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr4:110358000-110364800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:110358000-110366000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:110358000-110366000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:110358000-110366200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:110358000-110366800	Weak transcription	Fetal Intestine Large	intestine
44	chr4:110358000-110367200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:110358000-110370600	Weak transcription	Fetal Brain Female	brain
46	chr4:110358000-110372000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
48	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
49	chr4:110358200-110362000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:110358400-110362000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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