Variant report

Variant	rs13128221
Chromosome Location	chr4:110383775-110383776
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10000545	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs10002595	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs10016533	0.86[CEU][hapmap]
rs10155127	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10488879	0.81[ASN][1000 genomes]
rs10488910	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10516557	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10516558	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11929713	0.91[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11930655	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11933971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11937053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11941344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11941636	1.00[ASN][1000 genomes]
rs11942140	0.84[EUR][1000 genomes]
rs11942291	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11942858	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12639835	0.96[ASN][1000 genomes]
rs12640049	0.84[EUR][1000 genomes]
rs12641472	0.92[ASN][1000 genomes]
rs12643055	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs12643881	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12648965	0.93[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13103034	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110999	0.93[CEU][hapmap]
rs13122093	0.93[CEU][hapmap]
rs13123618	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs13125368	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13128124	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13134239	0.86[EUR][1000 genomes]
rs13140373	0.93[CEU][hapmap]
rs13142698	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs13143825	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13145066	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1509314	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs1509315	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040436	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17040439	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17040454	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17040461	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040488	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs17040510	0.87[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17040512	1.00[ASN][1000 genomes]
rs17040519	1.00[ASN][1000 genomes]
rs17619310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28527792	1.00[ASN][1000 genomes]
rs28611124	1.00[ASN][1000 genomes]
rs28681408	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs34153531	0.82[EUR][1000 genomes]
rs34224638	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34274964	0.82[EUR][1000 genomes]
rs34377662	0.85[EUR][1000 genomes]
rs34441811	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34482781	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34505473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34636377	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34836476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35110951	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35359830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35473144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35594044	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35762958	0.85[EUR][1000 genomes]
rs35791246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35940980	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36009064	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36115572	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60957336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61004219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66642182	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66667140	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67473696	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68041341	0.87[EUR][1000 genomes]
rs6812469	0.86[EUR][1000 genomes]
rs6817954	0.92[EUR][1000 genomes]
rs6821051	1.00[ASN][1000 genomes]
rs6821221	1.00[ASN][1000 genomes]
rs6827006	0.86[EUR][1000 genomes]
rs6835683	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs6837199	0.89[EUR][1000 genomes]
rs6841198	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs6845371	0.88[EUR][1000 genomes]
rs6848452	0.88[EUR][1000 genomes]
rs6856291	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6856446	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71603033	0.92[EUR][1000 genomes]
rs71623653	0.81[AMR][1000 genomes]
rs72896632	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7436583	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs7440570	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs7675602	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs7679836	0.88[EUR][1000 genomes]
rs7680296	0.83[EUR][1000 genomes]
rs9985632	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs9994676	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9994985	0.86[EUR][1000 genomes]
rs9999570	0.93[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
2	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
3	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
5	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
7	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
11	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
12	chr4:110367600-110383800	Weak transcription	NHLF	lung
13	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:110367600-110384200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:110367600-110384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:110367600-110384200	Weak transcription	Brain Germinal Matrix	brain
17	chr4:110367800-110383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:110367800-110383800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:110367800-110384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:110367800-110384200	Weak transcription	Fetal Kidney	kidney
21	chr4:110367800-110384200	Weak transcription	Osteobl	bone
22	chr4:110368000-110384200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:110369000-110384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:110369200-110384200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr4:110371400-110384000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:110371400-110384000	Weak transcription	Fetal Brain Female	brain
27	chr4:110371400-110384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:110371400-110384200	Weak transcription	Lung	lung
29	chr4:110371400-110384200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:110371400-110393200	Weak transcription	Stomach Mucosa	stomach
31	chr4:110371600-110383800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:110371600-110393400	Weak transcription	HSMMtube	muscle
33	chr4:110372200-110384200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr4:110372600-110383800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:110372800-110384000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:110372800-110384200	Weak transcription	Ovary	ovary
37	chr4:110373400-110384000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:110373400-110384000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:110373600-110384000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:110373600-110384000	Weak transcription	A549	lung
41	chr4:110373600-110384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:110374000-110384000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:110374400-110383800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr4:110374400-110384000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:110374400-110384000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:110374400-110384200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:110375400-110384200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr4:110375800-110384200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:110376000-110383800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr4:110376800-110383800	Weak transcription	Placenta	Placenta

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