Variant report

Variant	rs10488879
Chromosome Location	chr4:110309667-110309668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110308992..110311628-chr4:110320661..110323611,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10014623	0.87[EUR][1000 genomes]
rs10031251	0.90[EUR][1000 genomes]
rs10031399	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10155246	1.00[CHB][hapmap]
rs10488910	0.84[CHD][hapmap];0.85[TSI][hapmap]
rs10516557	0.84[CHD][hapmap];1.00[TSI][hapmap]
rs11098035	1.00[TSI][hapmap]
rs11937053	0.84[CHD][hapmap];1.00[TSI][hapmap]
rs11941636	0.81[ASN][1000 genomes]
rs12639835	0.84[ASN][1000 genomes]
rs12641197	0.81[ASN][1000 genomes]
rs12641272	0.81[ASN][1000 genomes]
rs12643881	0.81[CHD][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs13126829	0.85[ASN][1000 genomes]
rs13128221	0.81[ASN][1000 genomes]
rs17040446	0.81[ASN][1000 genomes]
rs17040454	0.84[CHD][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs17040512	0.81[ASN][1000 genomes]
rs17040519	0.81[ASN][1000 genomes]
rs17235830	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17585970	0.85[TSI][hapmap]
rs17619262	0.85[TSI][hapmap]
rs17619310	0.84[CHD][hapmap];0.85[TSI][hapmap]
rs17842269	0.81[ASN][1000 genomes]
rs1859144	0.81[ASN][1000 genomes]
rs1859145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2079107	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2214377	0.81[ASN][1000 genomes]
rs28463999	0.81[ASN][1000 genomes]
rs28527792	0.81[ASN][1000 genomes]
rs28611124	0.81[ASN][1000 genomes]
rs60369504	0.87[EUR][1000 genomes]
rs6821051	0.81[ASN][1000 genomes]
rs6821221	0.81[ASN][1000 genomes]
rs6825928	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6826161	1.00[CHB][hapmap]
rs730310	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7665024	0.85[ASN][1000 genomes]
rs7694523	0.85[ASN][1000 genomes]
rs7695754	1.00[JPT][hapmap]
rs9307329	0.81[ASN][1000 genomes]
rs9996537	0.81[ASN][1000 genomes]
rs9996920	0.81[ASN][1000 genomes]
rs9999270	0.81[ASN][1000 genomes]
rs9999278	0.81[ASN][1000 genomes]
rs9999751	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110305600-110310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:110307800-110310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:110307800-110310200	Weak transcription	Fetal Heart	heart
5	chr4:110308400-110310000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:110308800-110310400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:110308800-110310600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:110309000-110310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:110309000-110310000	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:110309200-110310200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:110309600-110310200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:110309600-110310600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:110309600-110310800	Enhancers	GM12878-XiMat	blood
14	chr4:110309600-110311000	Enhancers	Fetal Kidney	kidney
15	chr4:110309600-110311200	Enhancers	HSMM	muscle

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