Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEC24B-1	chr4:110235733-110237291	ENSG00000246774

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005198	1.00[ASN][1000 genomes]
rs10007410	0.95[ASN][1000 genomes]
rs10014623	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10031251	0.97[EUR][1000 genomes]
rs10031399	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10488879	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11933172	1.00[ASN][1000 genomes]
rs17235830	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1859145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1859147	0.83[ASN][1000 genomes]
rs1981540	0.83[ASN][1000 genomes]
rs2079108	1.00[ASN][1000 genomes]
rs28749845	1.00[ASN][1000 genomes]
rs4524460	1.00[ASN][1000 genomes]
rs60369504	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827985	1.00[ASN][1000 genomes]
rs730310	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7673867	0.83[ASN][1000 genomes]
rs7675344	0.87[ASN][1000 genomes]
rs9996165	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv515893	chr4:110222845-110254841	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110235800-110236800	Weak transcription	Psoas Muscle	Psoas

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