Variant report

Variant	rs7675344
Chromosome Location	chr4:110273146-110273147
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110273071-110273160	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RBMXP4	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10005198	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10007410	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10155246	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11933172	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11939924	0.91[EUR][1000 genomes]
rs12641197	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12641272	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13104799	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13113384	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13119700	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13126829	0.90[EUR][1000 genomes]
rs13138833	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1557804	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17842269	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859144	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1859146	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859147	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981540	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981541	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2079107	0.87[ASN][1000 genomes]
rs2079108	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2214377	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2346014	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28374470	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28463999	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28542804	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28585579	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28628718	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28749845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4524460	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60369504	0.87[ASN][1000 genomes]
rs6533426	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6825928	1.00[CEU][hapmap]
rs6827985	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6841133	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6841222	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7665024	0.90[EUR][1000 genomes]
rs7673595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7673867	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7680752	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7680920	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7684744	0.94[EUR][1000 genomes]
rs7685787	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7694523	0.90[EUR][1000 genomes]
rs7695754	1.00[CEU][hapmap]
rs7699247	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs876464	0.94[EUR][1000 genomes]
rs9307329	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9993228	0.94[EUR][1000 genomes]
rs9996165	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9996432	0.94[EUR][1000 genomes]
rs9996537	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9996920	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999270	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999278	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999751	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1937256	chr4:110273145-110273147	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110272800-110274200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links