Variant report

Variant	rs13119700
Chromosome Location	chr4:110287194-110287195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10005198	0.94[EUR][1000 genomes]
rs10007410	0.87[EUR][1000 genomes]
rs10028250	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10155246	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs11929713	0.82[JPT][hapmap]
rs11933172	0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]
rs11939924	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11942140	0.84[AMR][1000 genomes]
rs12640049	0.84[AMR][1000 genomes]
rs12641197	0.89[EUR][1000 genomes]
rs12641272	0.88[EUR][1000 genomes]
rs13104799	0.91[EUR][1000 genomes]
rs13113384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126829	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13138833	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142698	0.82[JPT][hapmap]
rs1557804	0.89[EUR][1000 genomes]
rs17842269	0.89[EUR][1000 genomes]
rs1859144	0.90[EUR][1000 genomes]
rs1859146	0.89[EUR][1000 genomes]
rs1859147	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981540	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981541	0.89[EUR][1000 genomes]
rs2079108	0.94[EUR][1000 genomes]
rs2214377	0.89[EUR][1000 genomes]
rs2346014	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28374470	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28463999	0.89[EUR][1000 genomes]
rs28542804	0.91[EUR][1000 genomes]
rs28585579	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28749845	0.94[EUR][1000 genomes]
rs4524460	0.94[EUR][1000 genomes]
rs6533426	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825928	0.82[CEU][hapmap]
rs6826161	0.89[CEU][hapmap]
rs6827985	0.94[EUR][1000 genomes]
rs6841133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841222	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665024	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7673595	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs7673867	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7675344	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7680752	0.89[EUR][1000 genomes]
rs7680920	0.89[EUR][1000 genomes]
rs7684744	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685787	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694523	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7695754	1.00[CEU][hapmap]
rs7699247	0.84[EUR][1000 genomes]
rs876464	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9307329	0.89[EUR][1000 genomes]
rs9993228	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996165	0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes]
rs9996432	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996537	0.89[EUR][1000 genomes]
rs9996920	0.89[EUR][1000 genomes]
rs9999270	0.89[EUR][1000 genomes]
rs9999278	0.89[EUR][1000 genomes]
rs9999751	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110286000-110287400	Weak transcription	Placenta	Placenta
2	chr4:110286800-110288000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:110286800-110288000	Enhancers	NHEK	skin
4	chr4:110287000-110287200	Flanking Active TSS	HUVEC	blood vessel
5	chr4:110287000-110287600	Enhancers	HMEC	breast
6	chr4:110287000-110288000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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