Variant report

Variant	rs11939924
Chromosome Location	chr4:110307997-110307998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10005198	0.91[EUR][1000 genomes]
rs10007410	0.84[EUR][1000 genomes]
rs10028250	0.91[ASN][1000 genomes]
rs10155246	0.86[EUR][1000 genomes]
rs11933172	0.91[EUR][1000 genomes]
rs12641197	0.86[EUR][1000 genomes]
rs12641272	0.85[EUR][1000 genomes]
rs13104799	0.88[EUR][1000 genomes]
rs13113384	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13119700	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13126829	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13138833	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1557804	0.86[EUR][1000 genomes]
rs17842269	0.86[EUR][1000 genomes]
rs1859144	0.87[EUR][1000 genomes]
rs1859146	0.86[EUR][1000 genomes]
rs1859147	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1981540	0.91[EUR][1000 genomes]
rs1981541	0.86[EUR][1000 genomes]
rs2079108	0.91[EUR][1000 genomes]
rs2214377	0.86[EUR][1000 genomes]
rs2346014	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28374470	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28463999	0.86[EUR][1000 genomes]
rs28542804	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28585579	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28628718	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28749845	0.91[EUR][1000 genomes]
rs4524460	0.91[EUR][1000 genomes]
rs6533426	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6827985	0.91[EUR][1000 genomes]
rs6841133	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6841222	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7665024	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7673867	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7675344	0.91[EUR][1000 genomes]
rs7680752	0.86[EUR][1000 genomes]
rs7680920	0.86[EUR][1000 genomes]
rs7684744	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685787	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694523	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7699247	0.81[EUR][1000 genomes]
rs876464	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9307329	0.86[EUR][1000 genomes]
rs9993228	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996165	0.91[EUR][1000 genomes]
rs9996432	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996537	0.86[EUR][1000 genomes]
rs9996920	0.86[EUR][1000 genomes]
rs9999270	0.86[EUR][1000 genomes]
rs9999278	0.86[EUR][1000 genomes]
rs9999751	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110300600-110308600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:110304800-110309000	Enhancers	Fetal Muscle Leg	muscle
3	chr4:110305200-110308000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:110305600-110310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110306800-110308000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:110307400-110308000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:110307400-110308000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:110307400-110308800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:110307600-110308200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:110307800-110308600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:110307800-110310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:110307800-110310200	Weak transcription	Fetal Heart	heart

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