Variant report

Variant	rs13138833
Chromosome Location	chr4:110305544-110305545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10002595	1.00[MEX][hapmap]
rs10005198	0.94[EUR][1000 genomes]
rs10007410	0.87[EUR][1000 genomes]
rs10016533	1.00[MEX][hapmap]
rs10028250	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10155246	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs11098033	0.81[CHD][hapmap]
rs11933172	0.87[CEU][hapmap];0.81[CHD][hapmap];0.94[EUR][1000 genomes]
rs11939924	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11942140	0.87[AMR][1000 genomes]
rs12640049	0.87[AMR][1000 genomes]
rs12641197	0.89[EUR][1000 genomes]
rs12641272	0.88[EUR][1000 genomes]
rs12650654	0.81[CHD][hapmap]
rs13104799	0.91[EUR][1000 genomes]
rs13113384	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119700	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123618	1.00[MEX][hapmap]
rs13126829	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13128445	0.85[MEX][hapmap]
rs13142698	1.00[MEX][hapmap]
rs1557804	0.89[EUR][1000 genomes]
rs17842269	0.89[EUR][1000 genomes]
rs1859144	0.90[EUR][1000 genomes]
rs1859146	0.89[EUR][1000 genomes]
rs1859147	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981540	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981541	0.89[EUR][1000 genomes]
rs2079108	0.94[EUR][1000 genomes]
rs2214377	0.89[EUR][1000 genomes]
rs2346014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28374470	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28463999	0.89[EUR][1000 genomes]
rs28542804	0.91[EUR][1000 genomes]
rs28585579	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628718	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681408	1.00[MEX][hapmap]
rs28749845	0.94[EUR][1000 genomes]
rs4524460	0.94[EUR][1000 genomes]
rs6533426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533434	1.00[MEX][hapmap]
rs6818911	1.00[MEX][hapmap]
rs6825928	0.87[CEU][hapmap];0.88[MEX][hapmap]
rs6827985	0.94[EUR][1000 genomes]
rs6835683	1.00[MEX][hapmap]
rs6841133	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841198	1.00[MEX][hapmap]
rs6841222	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848452	0.82[AMR][1000 genomes]
rs7436583	0.81[CHD][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs7436745	0.81[CHD][hapmap]
rs7665024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7673595	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs7673867	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7675344	0.87[CEU][hapmap];0.88[CHB][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7675602	1.00[MEX][hapmap]
rs7680752	0.89[EUR][1000 genomes]
rs7680920	0.89[EUR][1000 genomes]
rs7684744	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685787	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694523	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7695754	0.84[CEU][hapmap]
rs7699247	0.84[EUR][1000 genomes]
rs876464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9307329	0.89[EUR][1000 genomes]
rs9985632	0.88[MEX][hapmap]
rs9993228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996165	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs9996432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996537	0.89[EUR][1000 genomes]
rs9996920	0.89[EUR][1000 genomes]
rs9999270	0.89[EUR][1000 genomes]
rs9999278	0.89[EUR][1000 genomes]
rs9999570	1.00[MEX][hapmap]
rs9999751	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110300600-110308600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:110304800-110309000	Enhancers	Fetal Muscle Leg	muscle
3	chr4:110305000-110305600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110305200-110306400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:110305200-110306800	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:110305200-110308000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:110305400-110305600	Enhancers	Stomach Smooth Muscle	stomach
8	chr4:110305400-110306600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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