Variant report

Variant	rs7684744
Chromosome Location	chr4:110311126-110311127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110308992..110311628-chr4:110320661..110323611,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10005198	0.94[EUR][1000 genomes]
rs10007410	0.87[EUR][1000 genomes]
rs10028250	0.95[ASN][1000 genomes]
rs10155246	0.89[EUR][1000 genomes]
rs11933172	0.94[EUR][1000 genomes]
rs11939924	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641197	0.89[EUR][1000 genomes]
rs12641272	0.88[EUR][1000 genomes]
rs13104799	0.91[EUR][1000 genomes]
rs13113384	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13119700	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13126829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13138833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557804	0.89[EUR][1000 genomes]
rs17842269	0.89[EUR][1000 genomes]
rs1859144	0.90[EUR][1000 genomes]
rs1859146	0.89[EUR][1000 genomes]
rs1859147	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1981540	0.94[EUR][1000 genomes]
rs1981541	0.89[EUR][1000 genomes]
rs2079108	0.94[EUR][1000 genomes]
rs2214377	0.89[EUR][1000 genomes]
rs2346014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28374470	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28463999	0.89[EUR][1000 genomes]
rs28542804	0.91[EUR][1000 genomes]
rs28585579	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28628718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28749845	0.94[EUR][1000 genomes]
rs4524460	0.94[EUR][1000 genomes]
rs6533426	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6827985	0.94[EUR][1000 genomes]
rs6841133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6841222	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7665024	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7673867	0.94[EUR][1000 genomes]
rs7675344	0.94[EUR][1000 genomes]
rs7680752	0.89[EUR][1000 genomes]
rs7680920	0.89[EUR][1000 genomes]
rs7685787	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7694523	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7699247	0.84[EUR][1000 genomes]
rs876464	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307329	0.89[EUR][1000 genomes]
rs9993228	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996165	0.94[EUR][1000 genomes]
rs9996432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996537	0.89[EUR][1000 genomes]
rs9996920	0.89[EUR][1000 genomes]
rs9999270	0.89[EUR][1000 genomes]
rs9999278	0.89[EUR][1000 genomes]
rs9999751	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110309600-110311200	Enhancers	HSMM	muscle
3	chr4:110309800-110311200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:110310000-110311200	Enhancers	Ovary	ovary
5	chr4:110310000-110311400	Enhancers	Fetal Muscle Leg	muscle
6	chr4:110310200-110311200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:110310200-110311800	Enhancers	Fetal Heart	heart
8	chr4:110310400-110311200	Enhancers	Fetal Lung	lung
9	chr4:110310600-110311200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:110310600-110311200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:110310600-110311600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:110310600-110316800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:110310800-110311600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:110310800-110311600	Flanking Active TSS	GM12878-XiMat	blood
15	chr4:110310800-110317000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:110310800-110318800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:110311000-110311400	Weak transcription	HSMMtube	muscle
18	chr4:110311000-110311800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links