Variant report
| Variant | rs10031251 |
|---|---|
| Chromosome Location | chr4:110277909-110277910 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10014623 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10031399 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10155246 | 0.92[ASN][1000 genomes] |
| rs10488879 | 0.90[EUR][1000 genomes] |
| rs12641197 | 0.92[ASN][1000 genomes] |
| rs12641272 | 0.92[ASN][1000 genomes] |
| rs13104799 | 0.89[ASN][1000 genomes] |
| rs13126829 | 0.89[ASN][1000 genomes] |
| rs1557804 | 1.00[ASN][1000 genomes] |
| rs17235830 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17842269 | 0.92[ASN][1000 genomes] |
| rs1859144 | 0.92[ASN][1000 genomes] |
| rs1859145 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1859146 | 1.00[ASN][1000 genomes] |
| rs1981541 | 0.92[ASN][1000 genomes] |
| rs2079107 | 0.97[EUR][1000 genomes] |
| rs2214377 | 0.92[ASN][1000 genomes] |
| rs28374470 | 0.89[ASN][1000 genomes] |
| rs28463999 | 0.92[ASN][1000 genomes] |
| rs28542804 | 0.92[ASN][1000 genomes] |
| rs60369504 | 0.97[EUR][1000 genomes] |
| rs730310 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7665024 | 0.89[ASN][1000 genomes] |
| rs7680752 | 1.00[ASN][1000 genomes] |
| rs7680920 | 1.00[ASN][1000 genomes] |
| rs7694523 | 0.89[ASN][1000 genomes] |
| rs7699247 | 0.92[ASN][1000 genomes] |
| rs9307329 | 0.92[ASN][1000 genomes] |
| rs9996537 | 0.92[ASN][1000 genomes] |
| rs9996920 | 0.92[ASN][1000 genomes] |
| rs9999270 | 0.92[ASN][1000 genomes] |
| rs9999278 | 0.92[ASN][1000 genomes] |
| rs9999751 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461613 | chr4:109922064-110593460 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv595129 | chr4:109922064-110593460 | Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110277600-110278200 | Enhancers | Placenta | Placenta |
