Variant report

Variant	rs35762958
Chromosome Location	chr4:110470832-110470833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10000545	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10002595	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10005355	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155127	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516558	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098033	0.86[ASN][1000 genomes]
rs11098035	0.94[ASN][1000 genomes]
rs11929713	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930655	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11933971	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11934486	0.86[ASN][1000 genomes]
rs11935440	0.90[ASN][1000 genomes]
rs11935629	0.86[ASN][1000 genomes]
rs11938593	0.90[ASN][1000 genomes]
rs11941344	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942140	0.86[ASN][1000 genomes]
rs11942291	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942858	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11942928	0.90[ASN][1000 genomes]
rs11943384	0.90[ASN][1000 genomes]
rs11943430	0.90[ASN][1000 genomes]
rs11944375	0.90[ASN][1000 genomes]
rs11944427	0.90[ASN][1000 genomes]
rs11944659	0.86[ASN][1000 genomes]
rs12639832	0.86[ASN][1000 genomes]
rs12640049	0.86[ASN][1000 genomes]
rs12640161	0.94[ASN][1000 genomes]
rs12642304	1.00[ASN][1000 genomes]
rs12643055	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643844	1.00[ASN][1000 genomes]
rs12644055	0.90[ASN][1000 genomes]
rs12647695	0.90[ASN][1000 genomes]
rs12648138	0.92[ASN][1000 genomes]
rs12648965	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650654	0.90[ASN][1000 genomes]
rs12650873	0.90[ASN][1000 genomes]
rs13103034	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13123618	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13125368	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128124	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128221	0.85[EUR][1000 genomes]
rs13134239	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141701	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142698	0.94[ASN][1000 genomes]
rs13143825	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509314	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1509315	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040410	0.90[ASN][1000 genomes]
rs17040436	0.92[ASN][1000 genomes]
rs17040439	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040461	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17040488	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040510	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585970	0.83[ASN][1000 genomes]
rs17619262	0.83[ASN][1000 genomes]
rs28521972	0.85[ASN][1000 genomes]
rs28681408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34153531	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34224638	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274964	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34377662	0.92[ASN][1000 genomes]
rs34441811	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34482781	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34505473	0.83[EUR][1000 genomes]
rs34636377	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34836476	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35110951	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35359830	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35473144	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35594044	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35791246	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35940980	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36009064	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36115572	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775962	1.00[ASN][1000 genomes]
rs60957336	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61004219	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61242473	0.98[ASN][1000 genomes]
rs61439452	0.88[ASN][1000 genomes]
rs61553525	0.90[ASN][1000 genomes]
rs6533428	0.80[ASN][1000 genomes]
rs6533429	0.90[ASN][1000 genomes]
rs66642182	0.92[ASN][1000 genomes]
rs66667140	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67473696	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68041341	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812469	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815455	0.94[ASN][1000 genomes]
rs6817954	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818911	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823032	1.00[ASN][1000 genomes]
rs6827006	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833753	0.98[ASN][1000 genomes]
rs6835683	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837199	0.88[ASN][1000 genomes]
rs6841198	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845371	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848452	0.88[ASN][1000 genomes]
rs6851517	0.90[ASN][1000 genomes]
rs6852037	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856291	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856446	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71603033	0.92[ASN][1000 genomes]
rs72896619	0.94[ASN][1000 genomes]
rs72896622	0.94[ASN][1000 genomes]
rs72896625	0.94[ASN][1000 genomes]
rs72896629	0.94[ASN][1000 genomes]
rs72896632	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73838809	1.00[ASN][1000 genomes]
rs7436583	0.90[ASN][1000 genomes]
rs7436745	0.90[ASN][1000 genomes]
rs7440371	0.90[ASN][1000 genomes]
rs7440570	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7675602	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679836	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985632	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9985964	0.83[ASN][1000 genomes]
rs9994676	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994985	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999570	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv980240	chr4:110467259-110476042	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110423400-110480800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110448800-110479600	Weak transcription	Small Intestine	intestine
3	chr4:110448800-110480000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:110452400-110480800	Weak transcription	Right Ventricle	heart
5	chr4:110454000-110480600	Weak transcription	NHLF	lung
6	chr4:110454600-110480200	Weak transcription	A549	lung
7	chr4:110455600-110480600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:110456400-110472000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:110456400-110480600	Weak transcription	Brain Substantia Nigra	brain
10	chr4:110456400-110481600	Weak transcription	Fetal Heart	heart
11	chr4:110457400-110480600	Weak transcription	Right Atrium	heart
12	chr4:110460200-110480800	Weak transcription	Brain Anterior Caudate	brain
13	chr4:110461000-110480600	Weak transcription	HSMMtube	muscle
14	chr4:110461200-110471000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:110461200-110479600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:110462000-110478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:110462400-110474400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:110462600-110479600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:110462800-110480800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:110463200-110480800	Weak transcription	Colonic Mucosa	Colon
21	chr4:110464000-110476200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:110464400-110478800	Weak transcription	Dnd41	blood
23	chr4:110464600-110471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:110464600-110473800	Weak transcription	Fetal Kidney	kidney
25	chr4:110464600-110476000	Weak transcription	Thymus	Thymus
26	chr4:110464600-110480600	Weak transcription	Brain Hippocampus Middle	brain
27	chr4:110464600-110480600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:110464800-110473200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:110464800-110480200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:110464800-110480800	Weak transcription	Gastric	stomach
31	chr4:110465400-110475600	Weak transcription	Fetal Intestine Large	intestine
32	chr4:110465400-110480600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:110465400-110480600	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:110465600-110480600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:110465800-110480200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:110466200-110471600	Weak transcription	Fetal Lung	lung
37	chr4:110466200-110472000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:110467800-110473400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:110467800-110478800	Weak transcription	Fetal Stomach	stomach
40	chr4:110467800-110480400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:110467800-110480800	Weak transcription	Left Ventricle	heart
42	chr4:110468200-110480200	Weak transcription	GM12878-XiMat	blood
43	chr4:110468400-110480800	Weak transcription	Liver	Liver
44	chr4:110468600-110471200	Enhancers	HUVEC	blood vessel
45	chr4:110469400-110474400	Weak transcription	Ovary	ovary
46	chr4:110469600-110472200	Weak transcription	Aorta	Aorta
47	chr4:110469600-110474200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:110469600-110480600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:110469800-110472400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:110469800-110480600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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