Variant report

Variant	rs10014908
Chromosome Location	chr4:119773465-119773466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1015290	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17050348	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675981	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123399	0.81[ASN][1000 genomes]
rs56395344	0.90[ASN][1000 genomes]
rs56812813	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59075024	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6534108	0.90[ASN][1000 genomes]
rs72907223	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72907227	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658782	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684047	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9992693	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119771200-119773600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr4:119771600-119773800	Active TSS	GM12878-XiMat	blood
3	chr4:119771800-119773600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr4:119772200-119774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:119772400-119774000	Weak transcription	HUVEC	blood vessel
6	chr4:119772400-119779200	Weak transcription	Ovary	ovary
7	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
8	chr4:119772600-119773600	Enhancers	Primary B cells from cord blood	blood
9	chr4:119773000-119773600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr4:119773000-119775000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:119773200-119773600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr4:119773200-119774800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:119773400-119773600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr4:119773400-119773600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:119773400-119773800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:119773400-119774200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:119773400-119775200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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