Variant report

Variant	rs56812813
Chromosome Location	chr4:119774142-119774143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10014908	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1015290	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17050348	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28675981	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56123399	0.84[ASN][1000 genomes]
rs56395344	0.93[ASN][1000 genomes]
rs59075024	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6534108	0.93[ASN][1000 genomes]
rs72907223	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72907227	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7658782	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7684047	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9992693	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119772200-119774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119772400-119779200	Weak transcription	Ovary	ovary
3	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
4	chr4:119773000-119775000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr4:119773200-119774800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:119773400-119774200	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:119773400-119775200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:119773600-119774400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:119773600-119774600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:119773600-119774600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:119773800-119774200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:119773800-119774600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:119774000-119774600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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