Variant report

Variant	rs7658782
Chromosome Location	chr4:119769621-119769622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119756043..119758170-chr4:119769333..119772030,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10014908	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015290	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17050348	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675981	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123399	0.81[ASN][1000 genomes]
rs56395344	0.90[ASN][1000 genomes]
rs56812813	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59075024	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6534108	0.90[ASN][1000 genomes]
rs72907223	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72907227	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684047	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9992693	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119758200-119771200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119762800-119771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:119763000-119769800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:119764000-119771000	Weak transcription	NHDF-Ad	bronchial
5	chr4:119764000-119771200	Weak transcription	NHEK	skin
6	chr4:119764000-119771200	Weak transcription	Osteobl	bone
7	chr4:119764000-119771600	Weak transcription	HSMM	muscle
8	chr4:119764800-119771400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:119764800-119771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:119764800-119771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:119767000-119771400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:119768400-119769800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:119768400-119769800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:119768600-119769800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:119768600-119769800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:119768600-119770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:119768600-119770200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:119769600-119770000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:119769600-119770200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:119769600-119770800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:119769600-119771400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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