Variant report

Variant	rs6534108
Chromosome Location	chr4:119786049-119786050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10009552	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10014908	0.90[ASN][1000 genomes]
rs1015290	0.93[ASN][1000 genomes]
rs17050348	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs28675981	0.90[ASN][1000 genomes]
rs56123399	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56395344	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56812813	0.93[ASN][1000 genomes]
rs59075024	0.87[ASN][1000 genomes]
rs72907223	0.87[ASN][1000 genomes]
rs72907227	0.90[ASN][1000 genomes]
rs7658782	0.90[ASN][1000 genomes]
rs7679385	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7684047	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs9992693	0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119772400-119788200	Weak transcription	NHDF-Ad	bronchial
2	chr4:119780200-119788400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:119785800-119786400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr4:119785800-119786800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:119785800-119788200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:119786000-119786200	Enhancers	Osteobl	bone
7	chr4:119786000-119786800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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