Variant report

Variant	rs56123399
Chromosome Location	chr4:119788489-119788490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119786405..119788908-chr4:119826378..119828517,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10009552	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10014908	0.81[ASN][1000 genomes]
rs1015290	0.84[ASN][1000 genomes]
rs11944285	0.82[AFR][1000 genomes]
rs17050348	0.81[ASN][1000 genomes]
rs28675981	0.81[ASN][1000 genomes]
rs56395344	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56812813	0.84[ASN][1000 genomes]
rs6534108	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72907227	0.81[ASN][1000 genomes]
rs7658782	0.81[ASN][1000 genomes]
rs7679385	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119786400-119791200	Weak transcription	Right Atrium	heart
2	chr4:119786600-119791200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:119786800-119790600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:119786800-119790800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:119786800-119790800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:119786800-119791000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:119786800-119791000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:119786800-119791000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:119786800-119791000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:119786800-119791000	Weak transcription	HSMM	muscle
11	chr4:119786800-119791200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:119786800-119791200	Weak transcription	Adipose Nuclei	Adipose
13	chr4:119786800-119793200	Weak transcription	NHEK	skin
14	chr4:119787000-119790600	Weak transcription	HUVEC	blood vessel
15	chr4:119787600-119788600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:119787600-119790600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:119787800-119790800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:119787800-119791000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:119788200-119788600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:119788200-119789200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:119788200-119789200	Enhancers	NHDF-Ad	bronchial
22	chr4:119788200-119790600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:119788400-119789200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:119788400-119790600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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