Variant report

Variant	rs10017393
Chromosome Location	chr4:125959306-125959307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10009302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025227	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10033725	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12646199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648351	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2647127	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2647129	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28434449	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56053689	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6534459	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125951400-125961600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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