Variant report

Variant	rs12648351
Chromosome Location	chr4:125945072-125945073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10009302	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10017393	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10025227	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10033725	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646199	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2647125	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2647127	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2647129	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28434449	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56053689	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3355143	chr4:125944352-125945700	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125933000-125949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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