Variant report

Variant	rs10025227
Chromosome Location	chr4:125928868-125928869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10009302	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10017393	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10033725	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646199	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12648351	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2647125	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647127	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2647129	0.94[EUR][1000 genomes]
rs28434449	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56053689	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125928400-125932200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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