Variant report

Variant	rs28434449
Chromosome Location	chr4:125924594-125924595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10009302	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10017393	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10025227	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10033725	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646199	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648351	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2647125	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2647127	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2647129	0.94[EUR][1000 genomes]
rs56053689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125921000-125926600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:125921200-125925400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125922800-125928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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