Variant report

Variant	rs12646199
Chromosome Location	chr4:125962243-125962244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10009302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025227	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10033725	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648351	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2647125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2647127	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2647129	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28434449	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56053689	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6534459	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125960800-125963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:125961600-125963000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:125961600-125964200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:125961600-125964400	Enhancers	NHEK	skin
5	chr4:125961800-125964200	Enhancers	HMEC	breast
6	chr4:125962000-125962400	Enhancers	Placenta	Placenta
7	chr4:125962000-125962400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:125962000-125963800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:125962000-125964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:125962200-125965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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