Variant report

Variant	rs10018720
Chromosome Location	chr3:44861084-44861085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10024610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410220	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521392	1.00[AMR][1000 genomes]
rs28628113	1.00[AMR][1000 genomes]
rs28705206	1.00[AMR][1000 genomes]
rs28719894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728335	1.00[AMR][1000 genomes]
rs28841705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57037541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61216850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971843	1.00[AMR][1000 genomes]
rs72971845	1.00[AMR][1000 genomes]
rs72975953	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659664	1.00[AMR][1000 genomes]
rs7660063	1.00[AMR][1000 genomes]
rs7660599	1.00[AMR][1000 genomes]
rs7662666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7679524	1.00[AMR][1000 genomes]
rs7690518	0.98[AFR][1000 genomes]
rs9994614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834675	chr3:44846712-45007873	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:44803800-44886400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:44815600-44889200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:44815800-44871800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:44816000-44878200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:44820800-44902800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:44828400-44866800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:44828800-44872200	Weak transcription	Fetal Heart	heart
8	chr3:44836800-44865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:44838200-44865800	Weak transcription	Osteobl	bone
10	chr3:44839600-44865400	Weak transcription	NHDF-Ad	bronchial
11	chr3:44840600-44871800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:44840800-44871600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:44841800-44866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:44842200-44872400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:44842200-44878200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:44843400-44885600	Weak transcription	Fetal Brain Male	brain
17	chr3:44844400-44877000	Weak transcription	Primary B cells from cord blood	blood
18	chr3:44847800-44871800	Weak transcription	Hela-S3	cervix
19	chr3:44848000-44867600	Weak transcription	A549	lung
20	chr3:44849600-44867200	Weak transcription	Fetal Brain Female	brain
21	chr3:44850800-44868800	Weak transcription	Fetal Lung	lung
22	chr3:44852400-44865400	Weak transcription	Adipose Nuclei	Adipose
23	chr3:44853600-44896200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr3:44853800-44867200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:44854200-44866000	Weak transcription	NHLF	lung
26	chr3:44854200-44866800	Weak transcription	NHEK	skin
27	chr3:44854400-44869800	Weak transcription	Placenta	Placenta
28	chr3:44854600-44871600	Weak transcription	HepG2	liver
29	chr3:44855600-44865400	Weak transcription	Fetal Intestine Small	intestine
30	chr3:44856200-44862600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:44856800-44866800	Weak transcription	HMEC	breast
32	chr3:44857000-44876800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr3:44857200-44864200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:44857200-44864800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:44857200-44864800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:44857200-44865000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:44857200-44865000	Weak transcription	Fetal Stomach	stomach
38	chr3:44857200-44865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:44857200-44867000	Weak transcription	HSMM	muscle
40	chr3:44857200-44867000	Weak transcription	NH-A	brain
41	chr3:44857200-44867200	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:44857200-44867200	Weak transcription	HUVEC	blood vessel
43	chr3:44857200-44868400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr3:44857200-44872000	Weak transcription	Fetal Kidney	kidney
45	chr3:44857400-44864200	Weak transcription	Thymus	Thymus
46	chr3:44857400-44865400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:44857400-44866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:44857400-44866800	Weak transcription	K562	blood
49	chr3:44857600-44862800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr3:44857600-44864200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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