Variant report

Variant	rs28719894
Chromosome Location	chr4:160460067-160460068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10018720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024610	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28628113	1.00[AMR][1000 genomes]
rs28705206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728335	1.00[AMR][1000 genomes]
rs28841705	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57037541	1.00[AMR][1000 genomes]
rs61216850	1.00[AMR][1000 genomes]
rs61514742	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72975953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659664	1.00[AMR][1000 genomes]
rs7660063	1.00[AMR][1000 genomes]
rs7660599	1.00[AMR][1000 genomes]
rs7662666	1.00[AMR][1000 genomes]
rs7679524	1.00[AMR][1000 genomes]
rs7690518	0.80[AFR][1000 genomes]
rs9994614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160461400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:160459600-160462000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160459600-160463600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:160460000-160460200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:160460000-160460200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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