Variant report
| Variant | rs61514742 |
|---|---|
| Chromosome Location | chr4:160447905-160447906 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:160441080..160444317-chr4:160446730..160449120,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10018720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10024610 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28410220 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28521392 | 1.00[AMR][1000 genomes] |
| rs28628113 | 1.00[AMR][1000 genomes] |
| rs28705206 | 1.00[AMR][1000 genomes] |
| rs28719894 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28728335 | 1.00[AMR][1000 genomes] |
| rs28841705 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57037541 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61216850 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72971843 | 1.00[AMR][1000 genomes] |
| rs72971845 | 1.00[AMR][1000 genomes] |
| rs72975953 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7659664 | 1.00[AMR][1000 genomes] |
| rs7660063 | 1.00[AMR][1000 genomes] |
| rs7660599 | 1.00[AMR][1000 genomes] |
| rs7662666 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7679524 | 1.00[AMR][1000 genomes] |
| rs7690518 | 0.98[AFR][1000 genomes] |
| rs9994614 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160433200-160458000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
