Variant report

Variant	rs28841705
Chromosome Location	chr4:160455414-160455415
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10018720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410220	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521392	1.00[AMR][1000 genomes]
rs28628113	1.00[AMR][1000 genomes]
rs28705206	1.00[AMR][1000 genomes]
rs28719894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28728335	1.00[AMR][1000 genomes]
rs57037541	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61216850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971843	1.00[AMR][1000 genomes]
rs72971845	1.00[AMR][1000 genomes]
rs72975953	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7659664	1.00[AMR][1000 genomes]
rs7660063	1.00[AMR][1000 genomes]
rs7660599	1.00[AMR][1000 genomes]
rs7662666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7679524	1.00[AMR][1000 genomes]
rs7690518	0.98[AFR][1000 genomes]
rs9994614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160433200-160458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160455000-160456400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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