Variant report

Variant	rs28728335
Chromosome Location	chr4:160425237-160425238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160424643..160427469-chr4:160428460..160430734,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10011640	1.00[EUR][1000 genomes]
rs10018686	1.00[EUR][1000 genomes]
rs10018720	1.00[AMR][1000 genomes]
rs10024533	1.00[EUR][1000 genomes]
rs10024610	1.00[AMR][1000 genomes]
rs10025094	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs1502741	1.00[EUR][1000 genomes]
rs17038266	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17038473	1.00[EUR][1000 genomes]
rs17038509	1.00[EUR][1000 genomes]
rs17038521	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28410220	1.00[AMR][1000 genomes]
rs28463255	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28521392	1.00[AMR][1000 genomes]
rs28628113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705206	1.00[AMR][1000 genomes]
rs28719894	1.00[AMR][1000 genomes]
rs28757609	1.00[EUR][1000 genomes]
rs28841705	1.00[AMR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs57037541	1.00[AMR][1000 genomes]
rs61216850	1.00[AMR][1000 genomes]
rs61514742	1.00[AMR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818111	1.00[EUR][1000 genomes]
rs6818489	1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	1.00[EUR][1000 genomes]
rs72971811	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971815	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971843	1.00[AMR][1000 genomes]
rs72971845	1.00[AMR][1000 genomes]
rs72975953	1.00[AMR][1000 genomes]
rs7658685	1.00[EUR][1000 genomes]
rs7658755	1.00[EUR][1000 genomes]
rs7659664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7662613	1.00[EUR][1000 genomes]
rs7662666	1.00[AMR][1000 genomes]
rs7678896	1.00[EUR][1000 genomes]
rs7679524	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9994614	1.00[AMR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160420200-160425800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:160420200-160425800	Weak transcription	Pancreas	Pancrea
4	chr4:160421800-160425400	Weak transcription	Liver	Liver
5	chr4:160422000-160425600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:160423600-160425800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:160423800-160426800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:160424000-160426200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:160424000-160427200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:160424400-160426200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:160424600-160425600	Weak transcription	Hela-S3	cervix
12	chr4:160424800-160425800	Weak transcription	HSMM	muscle
13	chr4:160424800-160427000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:160424800-160427200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:160424800-160427600	Enhancers	Fetal Brain Male	brain
16	chr4:160424800-160427800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:160425000-160425400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr4:160425000-160425400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:160425000-160427000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:160425000-160427200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:160425000-160427400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:160425000-160427400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:160425000-160428000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:160425200-160425600	Weak transcription	NH-A	brain
25	chr4:160425200-160425800	Enhancers	Brain Germinal Matrix	brain

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