Variant report

Variant	rs72971815
Chromosome Location	chr4:160416650-160416651
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160415111..160419757-chr4:160420398..160424474,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10011640	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018686	1.00[EUR][1000 genomes]
rs10024533	1.00[EUR][1000 genomes]
rs10025094	1.00[EUR][1000 genomes]
rs11100220	1.00[EUR][1000 genomes]
rs11946018	1.00[EUR][1000 genomes]
rs1317334	1.00[EUR][1000 genomes]
rs1502741	1.00[EUR][1000 genomes]
rs17038266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038473	1.00[EUR][1000 genomes]
rs17038509	1.00[EUR][1000 genomes]
rs17038521	1.00[EUR][1000 genomes]
rs1881754	1.00[EUR][1000 genomes]
rs28463255	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28628113	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28728335	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28757609	1.00[EUR][1000 genomes]
rs28848564	1.00[EUR][1000 genomes]
rs3897680	1.00[EUR][1000 genomes]
rs6813172	1.00[EUR][1000 genomes]
rs6818111	1.00[EUR][1000 genomes]
rs6818489	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834258	1.00[EUR][1000 genomes]
rs6844487	1.00[EUR][1000 genomes]
rs72971811	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7658685	1.00[EUR][1000 genomes]
rs7658755	1.00[EUR][1000 genomes]
rs7659664	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660063	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660599	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7662613	1.00[EUR][1000 genomes]
rs7678896	1.00[EUR][1000 genomes]
rs7679524	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9995168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160416400-160421800	Enhancers	Liver	Liver
3	chr4:160416600-160417000	Enhancers	Fetal Lung	lung

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